multiview-stitcher

Workspace

Data & display

Drop OME-Zarr folders or CZI files or click to choose from this device

Loaded views

None

Your loaded image views will appear here.

Coordinate system

Displayed transform

Operations use the coordinate system selected here.

Display options

Positional colors

Channels will appear after loading image data.

No image data loaded

Drop an OME-Zarr folder in the data panel to begin.

Processing

Operations

01

Interactive tile placement

Create an editable copy of the displayed coordinate system.

New transform name

The new coordinate system becomes active immediately for interactive placement.

Manual placement Activate manual placement

Alt + drag: Move a tile within the plane of the view.
Ctrl + Alt + drag: Turn a tile about its centre, in that same plane.

Orthogonal views only. The tile under the pointer is the one that moves; where tiles overlap, the one selected in the views list does. The new placement is saved when you release.

Apply to channels

This data has no channel axis.

Apply to tiles

With nothing selected, a drag moves the topmost tile under the pointer. Click a tile in the viewer or a view in the list to select it; Ctrl+click (⌘ on macOS) either one to select several: a drag then moves them all together, and a rotation turns each about its own center.

Apply to timepoints

Range Current timepoint

This data has no time axis.

02

Registration

Align all loaded views from the displayed coordinate system.

Registration channel New transform name

Layers to register All layers Only selected layers

Select a layer by clicking it in the viewer or in the loaded views list. Hold Ctrl (⌘ on macOS) while clicking to select several layers. Unregistered layers keep their current placement under the new transform.